Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase-4 | SAMN05444682_101147 | Not Available | Positive | 181924 - 182988 | 39584.1 |
| membrane protein | SAMN05444682_101148 | Not Available | Negative | 182970 - 183956 | 36468.9 |
| long-chain acyl-coa synthetase | SAMN05444682_101149 | Not Available | Negative | 184004 - 185764 | 65416.8 |
| hypothetical protein | SAMN05444682_101150 | Not Available | Positive | 185931 - 186482 | 20095.8 |
| predicted metalloprotease, contains c-terminal pdz domain | SAMN05444682_101151 | Not Available | Negative | 186518 - 188320 | 66994.4 |
| nadp-dependent 3-hydroxy acid dehydrogenase ydfg | SAMN05444682_101152 | Not Available | Negative | 188344 - 189108 | 27738.3 |
| probable protein-translocating porin port | SAMN05444682_101153 | Not Available | Negative | 189155 - 189925 | 29029.5 |
| demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase | SAMN05444682_101154 | Not Available | Negative | 189922 - 190743 | 30846.4 |
| primary replicative dna helicase | SAMN05444682_101155 | Not Available | Positive | 191168 - 192745 | 58470.5 |
| dna helicase-2 / atp-dependent dna helicase pcra | SAMN05444682_101156 | Not Available | Positive | 192910 - 195180 | 85962.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
