Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05444682_103190 | Not Available | Positive | 1892037 - 1892240 | 7819.41 |
| dna-(apurinic or apyrimidinic site) lyase /endonuclease iii | SAMN05444682_103191 | Not Available | Positive | 1892250 - 1892897 | 24339.5 |
| recombination protein reca | SAMN05444682_103192 | Not Available | Positive | 1893088 - 1894095 | 36067.8 |
| 3-oxoacyl-[acyl-carrier protein] reductase | SAMN05444682_103193 | Not Available | Negative | 1894111 - 1894896 | 27461.1 |
| calcineurin-like phosphoesterase | SAMN05444682_103194 | Not Available | Positive | 1895044 - 1895970 | 34642.9 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05444682_103195 | Not Available | Positive | 1896075 - 1896653 | 22627.2 |
| fecr family protein | SAMN05444682_103196 | Not Available | Positive | 1896730 - 1897869 | 42351.3 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05444682_103197 | Not Available | Positive | 1898082 - 1901570 | 128627.0 |
| starch-binding associating with outer membrane | SAMN05444682_103198 | Not Available | Positive | 1901592 - 1903025 | 54143.9 |
| fad dependent oxidoreductase | SAMN05444682_103199 | Not Available | Positive | 1903031 - 1904716 | 62905.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
