Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-isopropylmalate dehydrogenase | SAMN05444682_103180 | Not Available | Positive | 1875999 - 1877090 | 39455.2 |
| l-threonine ammonia-lyase | SAMN05444682_103181 | Not Available | Positive | 1877087 - 1878319 | 45466.8 |
| iron complex outermembrane recepter protein | SAMN05444682_103182 | Not Available | Positive | 1878425 - 1881904 | 128120.0 |
| starch-binding associating with outer membrane | SAMN05444682_103183 | Not Available | Positive | 1881918 - 1883603 | 64245.4 |
| thioredoxin 1 | SAMN05444682_103184 | Not Available | Positive | 1883935 - 1884171 | 9069.96 |
| protein involved in ribonucleotide reduction | SAMN05444682_103185 | Not Available | Positive | 1884273 - 1884683 | 15254.1 |
| ribonucleoside-diphosphate reductase alpha chain | SAMN05444682_103186 | Not Available | Positive | 1884640 - 1886745 | 80388.2 |
| ribonucleoside-diphosphate reductase beta chain | SAMN05444682_103187 | Not Available | Positive | 1886865 - 1887848 | 37851.4 |
| oligopeptidase b | SAMN05444682_103188 | Not Available | Negative | 1887908 - 1890079 | 81617.2 |
| subtilase family protein | SAMN05444682_103189 | Not Available | Positive | 1890321 - 1891952 | 60567.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
