Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cellulase (glycosyl hydrolase family 5) | SAMN05444682_103130 | Not Available | Negative | 1810394 - 1812322 | 73273.8 |
| endo-1,4-beta-xylanase, gh35 family | SAMN05444682_103131 | Not Available | Negative | 1812333 - 1813874 | 58918.8 |
| endo-1,4-beta-xylanase, gh35 family | SAMN05444682_103132 | Not Available | Negative | 1813887 - 1815257 | 52488.3 |
| beta-mannosidase | SAMN05444682_103133 | Not Available | Negative | 1815286 - 1818123 | 108571.0 |
| susd family protein | SAMN05444682_103134 | Not Available | Negative | 1818092 - 1819537 | 54438.3 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05444682_103135 | Not Available | Negative | 1819554 - 1822535 | 108473.0 |
| acetyl esterase/lipase | SAMN05444682_103136 | Not Available | Negative | 1823115 - 1824017 | 33024.7 |
| hypothetical protein | SAMN05444682_103137 | Not Available | Negative | 1824080 - 1825420 | 49480.1 |
| hypothetical protein | SAMN05444682_103138 | Not Available | Negative | 1825513 - 1825809 | 11390.8 |
| predicted o-methyltransferase yrrm | SAMN05444682_103139 | Not Available | Positive | 1825947 - 1826636 | 25873.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
