Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar phosphate isomerase/epimerase | SAMN05444682_102592 | Not Available | Negative | 1642540 - 1643409 | 32123.3 |
| starch-binding associating with outer membrane | SAMN05444682_102593 | Not Available | Negative | 1643422 - 1644885 | 53280.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05444682_102594 | Not Available | Negative | 1644908 - 1648021 | 113434.0 |
| transcriptional regulator, iclr family | SAMN05444682_102595 | Not Available | Negative | 1648171 - 1648971 | 29554.7 |
| duf218 domain-containing protein | SAMN05444682_102596 | Not Available | Negative | 1649112 - 1650356 | 47113.8 |
| starch-binding associating with outer membrane | SAMN05444682_102597 | Not Available | Negative | 1650391 - 1651911 | 57226.9 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05444682_102598 | Not Available | Negative | 1651923 - 1655168 | 118205.0 |
| type ix secretion system membrane protein, porp/sprf family | SAMN05444682_102599 | Not Available | Negative | 1655622 - 1656488 | 31486.4 |
| gliding motility-associated c-terminal domain-containing protein | SAMN05444682_102600 | Not Available | Negative | 1656504 - 1658948 | 85600.1 |
| ig-like domain (group 3) | SAMN05444682_102601 | Not Available | Negative | 1659110 - 1666819 | 270311.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
