Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysophospholipase l1 | SAMN05444682_102572 | Not Available | Negative | 1614966 - 1616192 | 45231.2 |
| signal transduction histidine kinase | SAMN05444682_102573 | Not Available | Negative | 1616337 - 1618208 | 70622.7 |
| pdz domain-containing protein | SAMN05444682_102574 | Not Available | Negative | 1618273 - 1620675 | 88400.1 |
| susd family protein | SAMN05444682_102575 | Not Available | Negative | 1620686 - 1622128 | 53792.8 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05444682_102576 | Not Available | Negative | 1622147 - 1625494 | 122266.0 |
| fecr family protein | SAMN05444682_102577 | Not Available | Negative | 1625646 - 1626803 | 42314.9 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05444682_102578 | Not Available | Negative | 1626902 - 1627444 | 20412.9 |
| protein of unknown function, duf488 | SAMN05444682_102579 | Not Available | Positive | 1627775 - 1628242 | 18275.9 |
| protein of unknown function | SAMN05444682_102580 | Not Available | Positive | 1628263 - 1628472 | 7646.94 |
| eama-like transporter family protein | SAMN05444682_102581 | Not Available | Positive | 1628480 - 1629349 | 30313.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
