Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fecr family protein | SAMN05444682_102562 | Not Available | Negative | 1605157 - 1606374 | 44818.3 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05444682_102563 | Not Available | Negative | 1606465 - 1607043 | 22160.8 |
| predicted dna-binding transcriptional regulator yafy, contains an hth and wyl domains | SAMN05444682_102564 | Not Available | Negative | 1607168 - 1608232 | 40937.5 |
| hypothetical protein | SAMN05444682_102565 | Not Available | Negative | 1608675 - 1608968 | 10289.5 |
| spfh domain / band 7 family protein | SAMN05444682_102566 | Not Available | Positive | 1609016 - 1610110 | 41208.2 |
| pp_01326 | SAMN05444682_102567 | Not Available | Positive | 1610180 - 1611613 | Not Available |
| uncharacterized conserved protein | SAMN05444682_102568 | Not Available | Positive | 1611688 - 1612032 | 13064.5 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05444682_102569 | Not Available | Positive | 1612040 - 1613287 | 46273.5 |
| trna (cmo5u34)-methyltransferase | SAMN05444682_102570 | Not Available | Negative | 1613280 - 1614002 | 27042.4 |
| dna-binding transcriptional regulator, lysr family | SAMN05444682_102571 | Not Available | Positive | 1614091 - 1614960 | 32839.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
