Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| microcystin degradation protein mlrc, contains duf1485 domain | SAMN05444682_102422 | Not Available | Positive | 1416985 - 1418550 | 56981.2 |
| xaa-pro aminopeptidase | SAMN05444682_102423 | Not Available | Negative | 1418781 - 1420559 | 65490.9 |
| hypothetical protein | SAMN05444682_102424 | Not Available | Positive | 1420644 - 1421366 | 27578.3 |
| gh3 auxin-responsive promoter | SAMN05444682_102425 | Not Available | Negative | 1421371 - 1422969 | 60403.2 |
| d-alanyl-d-alanine carboxypeptidase / d-alanyl-d-alanine-endopeptidase (penicillin-binding protein 4) | SAMN05444682_102426 | Not Available | Positive | 1423025 - 1424443 | 51480.5 |
| prolyl oligopeptidase family protein | SAMN05444682_102427 | Not Available | Negative | 1424488 - 1426116 | 60867.2 |
| allosteric nadp-dependent malic enzyme | SAMN05444682_102428 | Not Available | Positive | 1426594 - 1428882 | 83717.5 |
| holliday junction dna helicase subunit ruva | SAMN05444682_102429 | Not Available | Positive | 1428891 - 1429472 | 21318.0 |
| cell surface protein spra | SAMN05444682_102430 | Not Available | Positive | 1429537 - 1436571 | 268313.0 |
| protein of unknown function | SAMN05444682_102431 | Not Available | Negative | 1436695 - 1437921 | 45708.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
