Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ubiquinone/menaquinone biosynthesis c-methylase ubie | SAMN05444682_102402 | Not Available | Negative | 1384070 - 1384831 | 29498.1 |
| hypothetical protein | SAMN05444682_102403 | Not Available | Negative | 1384818 - 1384943 | 4764.96 |
| rok family protein (putative glucokinase) | SAMN05444682_102404 | Not Available | Positive | 1385080 - 1386300 | 44150.6 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05444682_102405 | Not Available | Positive | 1386381 - 1389695 | 122174.0 |
| starch-binding associating with outer membrane | SAMN05444682_102406 | Not Available | Positive | 1389793 - 1391373 | 59030.8 |
| repeat domain-containing protein | SAMN05444682_102407 | Not Available | Positive | 1391521 - 1392999 | 55570.8 |
| alpha-l-fucosidase | SAMN05444682_102408 | Not Available | Positive | 1393054 - 1394508 | 55757.4 |
| prolyl oligopeptidase family protein | SAMN05444682_102409 | Not Available | Positive | 1394528 - 1397068 | 93576.4 |
| hypothetical protein | SAMN05444682_102410 | Not Available | Positive | 1397092 - 1398237 | 42931.3 |
| glycosyl hydrolases family 16 | SAMN05444682_102411 | Not Available | Positive | 1398348 - 1399205 | 32235.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
