Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine kinase | SAMN05444682_102362 | Not Available | Negative | 1330000 - 1333002 | 114282.0 |
| asparaginase | SAMN05444682_102363 | Not Available | Negative | 1333065 - 1334087 | 36448.8 |
| sh3 domain-containing protein | SAMN05444682_102364 | Not Available | Positive | 1334178 - 1335431 | 45659.8 |
| l-alanine-dl-glutamate epimerase | SAMN05444682_102365 | Not Available | Positive | 1335440 - 1336486 | 38545.8 |
| predicted dehydrogenase | SAMN05444682_102366 | Not Available | Negative | 1336551 - 1337942 | 51309.6 |
| predicted dehydrogenase | SAMN05444682_102367 | Not Available | Negative | 1337943 - 1339385 | 53138.8 |
| type 1 glutamine amidotransferase (gatase1) | SAMN05444682_102368 | Not Available | Negative | 1339414 - 1340259 | 32349.9 |
| methane oxygenase pmoa | SAMN05444682_102369 | Not Available | Negative | 1340289 - 1341263 | 36779.1 |
| zinc carboxypeptidase | SAMN05444682_102370 | Not Available | Negative | 1341452 - 1342933 | 55395.0 |
| muramoyltetrapeptide carboxypeptidase | SAMN05444682_102371 | Not Available | Negative | 1342930 - 1343949 | 37379.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
