Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyl hydrolases family 28 | SAMN05444682_102302 | Not Available | Negative | 1256062 - 1256817 | 27350.9 |
| polygalacturonase | SAMN05444682_102303 | Not Available | Negative | 1256807 - 1258285 | 55590.6 |
| alpha-l-rhamnosidase | SAMN05444682_102304 | Not Available | Negative | 1258297 - 1261164 | 108686.0 |
| susd family protein | SAMN05444682_102305 | Not Available | Negative | 1261277 - 1262875 | 59119.6 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05444682_102306 | Not Available | Negative | 1262888 - 1266667 | 138162.0 |
| hypothetical protein | SAMN05444682_102307 | Not Available | Positive | 1266668 - 1266874 | 7633.33 |
| fecr family protein | SAMN05444682_102308 | Not Available | Negative | 1266869 - 1267876 | 38225.3 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05444682_102309 | Not Available | Negative | 1268023 - 1268583 | 21475.0 |
| hypothetical protein | SAMN05444682_102310 | Not Available | Negative | 1268679 - 1268891 | 7689.81 |
| protein of unknown function | SAMN05444682_102311 | Not Available | Negative | 1268967 - 1269968 | 36300.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
