Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fecr family protein | SAMN05444682_102292 | Not Available | Negative | 1244380 - 1245528 | 43483.5 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05444682_102293 | Not Available | Negative | 1245637 - 1246212 | 22685.3 |
| hypothetical protein | SAMN05444682_102294 | Not Available | Positive | 1246216 - 1246374 | 5988.41 |
| hypothetical protein | SAMN05444682_102295 | Not Available | Negative | 1246403 - 1246543 | 5338.84 |
| dtdp-4-dehydrorhamnose reductase | SAMN05444682_102296 | Not Available | Positive | 1246687 - 1247592 | 33102.6 |
| acyl-coa hydrolase | SAMN05444682_102297 | Not Available | Positive | 1247668 - 1248192 | 19719.8 |
| glucoamylase (glucan-1,4-alpha-glucosidase), gh15 family | SAMN05444682_102298 | Not Available | Positive | 1248261 - 1250096 | 70656.1 |
| right handed beta helix region | SAMN05444682_102299 | Not Available | Negative | 1250117 - 1252294 | 80992.3 |
| alpha-1,2-mannosidase, putative | SAMN05444682_102300 | Not Available | Negative | 1252291 - 1254585 | 86636.4 |
| polygalacturonase | SAMN05444682_102301 | Not Available | Negative | 1254582 - 1256048 | 54344.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
