Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine ammonia-lyase | SAMN03003324_00937 | Not Available | Positive | 1015144 - 1016706 | 56419.0 |
| urocanate hydratase | SAMN03003324_00938 | Not Available | Positive | 1016681 - 1018357 | 61009.8 |
| imidazolonepropionase | SAMN03003324_00939 | Not Available | Positive | 1018357 - 1019601 | 44692.7 |
| formiminoglutamase | SAMN03003324_00940 | Not Available | Positive | 1019603 - 1020595 | 35700.4 |
| Trna-pro | Not Available | Not Available | Positive | 1020922 - 1020995 | Not Available |
| hypothetical protein | SAMN03003324_00942 | Not Available | Negative | 1021243 - 1023408 | 79189.5 |
| hypothetical protein | SAMN03003324_00943 | Not Available | Negative | 1023812 - 1024612 | 28537.2 |
| transcriptional regulator, tetr family | SAMN03003324_00944 | Not Available | Positive | 1024715 - 1025296 | 21945.6 |
| l-threonine aldolase | SAMN03003324_00945 | Not Available | Negative | 1025346 - 1026386 | 38233.5 |
| dna-binding transcriptional regulator, marr family | SAMN03003324_00946 | Not Available | Positive | 1026496 - 1027266 | 28672.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

