Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ompa family protein | SAMN03003324_00927 | Not Available | Positive | 1001774 - 1002799 | 37716.6 |
| histidine kinase | SAMN03003324_00928 | Not Available | Positive | 1002922 - 1003977 | 40206.2 |
| two component transcriptional regulator, lyttr family | SAMN03003324_00929 | Not Available | Positive | 1003974 - 1004672 | 27057.8 |
| hypothetical protein | SAMN03003324_00930 | Not Available | Positive | 1004689 - 1006428 | 65951.4 |
| serine/threonine protein phosphatase 1 | SAMN03003324_00931 | Not Available | Negative | 1006438 - 1007091 | 24936.7 |
| ftsx-like permease family protein | SAMN03003324_00932 | Not Available | Negative | 1007246 - 1009636 | 89483.6 |
| arac-type dna-binding protein | SAMN03003324_00933 | Not Available | Negative | 1009774 - 1010649 | 33487.4 |
| delta-1-pyrroline-5-carboxylate dehydrogenase | SAMN03003324_00934 | Not Available | Positive | 1010943 - 1012583 | 59526.0 |
| mechanosensitive ion channel | SAMN03003324_00935 | Not Available | Positive | 1012718 - 1014556 | 70201.9 |
| dna-binding transcriptional regulator, marr family | SAMN03003324_00936 | Not Available | Positive | 1014651 - 1015160 | 19198.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

