Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methane oxygenase pmoa | SAMN03003324_00917 | Not Available | Positive | 989172 - 990185 | 37785.0 |
| hypothetical protein | SAMN03003324_00918 | Not Available | Positive | 990414 - 991481 | 38664.6 |
| peptidoglycan/lps o-acetylase oafa/yrhl, contains acyltransferase and sgnh-hydrolase domains | SAMN03003324_00919 | Not Available | Positive | 991483 - 992673 | 44693.6 |
| protein n-acetyltransferase, rimj/riml family | SAMN03003324_00920 | Not Available | Positive | 992792 - 993349 | 21510.3 |
| atpase family associated with various cellular activities (aaa) | SAMN03003324_00921 | Not Available | Positive | 993346 - 994059 | 27236.1 |
| pas domain s-box-containing protein | SAMN03003324_00922 | Not Available | Negative | 994205 - 995665 | 54404.8 |
| phosphatidylglycerol lysyltransferase | SAMN03003324_00923 | Not Available | Positive | 995843 - 998425 | 97138.4 |
| type iv secretory pathway, virj component | SAMN03003324_00924 | Not Available | Positive | 998440 - 999873 | 52629.8 |
| glucose/arabinose dehydrogenase, beta-propeller fold | SAMN03003324_00925 | Not Available | Positive | 1000051 - 1001232 | 43438.7 |
| hypothetical protein | SAMN03003324_00926 | Not Available | Positive | 1001390 - 1001659 | 9692.83 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

