Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN03003324_00015 | Not Available | Positive | 12051 - 12635 | 22764.8 |
| hypothetical protein | SAMN03003324_00016 | Not Available | Positive | 12655 - 12954 | 11641.2 |
| hypothetical protein | SAMN03003324_00017 | Not Available | Positive | 13523 - 14263 | 28198.2 |
| thioredoxin | SAMN03003324_00018 | Not Available | Positive | 14659 - 15018 | 13275.1 |
| peptide-methionine (r)-s-oxide reductase | SAMN03003324_00019 | Not Available | Positive | 15219 - 15677 | 17284.1 |
| gluconolactonase | SAMN03003324_00020 | Not Available | Negative | 15743 - 16585 | 31151.8 |
| uncharacterized membrane protein ykgb | SAMN03003324_00021 | Not Available | Negative | 16743 - 17303 | 20426.4 |
| arac-type dna-binding protein | SAMN03003324_00022 | Not Available | Negative | 17384 - 18229 | 32371.2 |
| hypothetical protein | SAMN03003324_00023 | Not Available | Positive | 18585 - 19202 | 23717.9 |
| radical sam superfamily enzyme ygiq, upf0313 family | SAMN03003324_00024 | Not Available | Negative | 19216 - 21447 | 85107.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

