Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN03003324_00700 | Not Available | Negative | 792003 - 795200 | 119257.0 |
| thiol-disulfide isomerase or thioredoxin | SAMN03003324_00701 | Not Available | Negative | 795238 - 796620 | 52230.3 |
| helix-turn-helix domain-containing protein | SAMN03003324_00702 | Not Available | Positive | 796931 - 797362 | 16433.5 |
| helix-turn-helix | SAMN03003324_00703 | Not Available | Positive | 797370 - 797798 | 15923.0 |
| hypothetical protein | SAMN03003324_00704 | Not Available | Positive | 797811 - 798524 | 27197.9 |
| rna polymerase, sigma subunit, sigz | SAMN03003324_00705 | Not Available | Negative | 798585 - 799112 | 20482.5 |
| hypothetical protein | SAMN03003324_00706 | Not Available | Negative | 799413 - 799595 | 6947.18 |
| hypothetical protein | SAMN03003324_00707 | Not Available | Negative | 799673 - 800431 | 29755.8 |
| protein of unknown function | SAMN03003324_00708 | Not Available | Negative | 800452 - 802590 | 85269.5 |
| protein of unknown function | SAMN03003324_00709 | Not Available | Positive | 802778 - 803215 | 16735.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

