Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | SAMN03003324_00690 | Not Available | Positive | 782312 - 782665 | 13848.6 |
| helix-turn-helix domain-containing protein | SAMN03003324_00691 | Not Available | Positive | 782692 - 783000 | 12155.8 |
| protein of unknown function | SAMN03003324_00692 | Not Available | Positive | 783086 - 784555 | 55732.8 |
| dna topoisomerase-3 | SAMN03003324_00693 | Not Available | Positive | 784562 - 786637 | 77692.9 |
| transcriptional regulator, abiei antitoxin, type iv ta system | SAMN03003324_00694 | Not Available | Positive | 786756 - 787544 | 30026.4 |
| nucleotidyl transferase abieii toxin, type iv ta system | SAMN03003324_00695 | Not Available | Positive | 787546 - 788466 | 35361.1 |
| arac-type dna-binding protein | SAMN03003324_00696 | Not Available | Positive | 788661 - 789605 | 37342.9 |
| hypothetical protein | SAMN03003324_00697 | Not Available | Positive | 789749 - 790276 | 19765.9 |
| hypothetical protein | SAMN03003324_00698 | Not Available | Positive | 790308 - 790571 | 9261.79 |
| susd family protein | SAMN03003324_00699 | Not Available | Negative | 790616 - 791989 | 51565.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

