Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| merr hth family regulatory protein | SAMN03003324_00649 | Not Available | Positive | 734659 - 734979 | 12667.2 |
| lactate dehydrogenase | SAMN03003324_00650 | Not Available | Negative | 734957 - 735928 | 35175.2 |
| pyruvate dehydrogenase (quinone) | SAMN03003324_00651 | Not Available | Negative | 736012 - 737781 | 64167.7 |
| superoxide dismutase, fe-mn family | SAMN03003324_00652 | Not Available | Negative | 737791 - 738519 | 27108.7 |
| protein sco1/2 | SAMN03003324_00653 | Not Available | Negative | 738564 - 739184 | 23728.6 |
| hypothetical protein | SAMN03003324_00654 | Not Available | Negative | 739181 - 739615 | 16423.9 |
| 3-oxoacyl-[acyl-carrier-protein] synthase-3 | SAMN03003324_00655 | Not Available | Negative | 739618 - 740619 | 36574.5 |
| protein sco1/2 | SAMN03003324_00656 | Not Available | Positive | 740719 - 741369 | 25090.1 |
| cytochrome c oxidase, cbb3-type, subunit iii | SAMN03003324_00657 | Not Available | Positive | 741373 - 741792 | 15580.9 |
| dna-binding transcriptional response regulator, ntrc family, contains rec, aaa-type atpase, and a fis-type dna-binding domains | SAMN03003324_00659 | Not Available | Positive | 742264 - 743667 | 52514.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

