Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tigr00341 family protein | SAMN03003324_00599 | Not Available | Negative | 681684 - 683021 | 49462.6 |
| sodium/proton antiporter, nhaa family | SAMN03003324_00600 | Not Available | Negative | 683039 - 684382 | 48697.6 |
| voltage-gated potassium channel | SAMN03003324_00601 | Not Available | Positive | 684470 - 685288 | 30990.0 |
| choline/glycine/proline betaine transport protein | SAMN03003324_00602 | Not Available | Positive | 685312 - 687327 | 76015.7 |
| transcriptional regulator, hxlr family | SAMN03003324_00603 | Not Available | Negative | 687943 - 688317 | 13847.6 |
| transcriptional regulator, alpa family | SAMN03003324_00604 | Not Available | Positive | 689129 - 689443 | 12278.9 |
| site-specific recombinase xerd | SAMN03003324_00605 | Not Available | Negative | 689635 - 690840 | 46635.2 |
| dna binding domain-containing protein, excisionase family | SAMN03003324_00606 | Not Available | Negative | 690844 - 691410 | 21732.6 |
| hypothetical protein | SAMN03003324_00607 | Not Available | Positive | 691645 - 691839 | 7548.54 |
| hypothetical protein | SAMN03003324_00608 | Not Available | Negative | 691908 - 692654 | 29142.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

