Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-polyprenyl-6-methoxyphenol hydroxylase | SAMN03003324_00538 | Not Available | Positive | 619691 - 620896 | 44385.0 |
| cupin domain protein | SAMN03003324_00539 | Not Available | Negative | 620918 - 621340 | 15477.1 |
| nucleotide-binding universal stress protein, uspa family | SAMN03003324_00540 | Not Available | Negative | 621526 - 622347 | 30085.9 |
| outer membrane receptor proteins, mostly fe transport | SAMN03003324_00541 | Not Available | Negative | 622527 - 624791 | 83002.1 |
| hypothetical protein | SAMN03003324_00542 | Not Available | Negative | 624849 - 625235 | 14377.1 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN03003324_00543 | Not Available | Positive | 625323 - 625880 | 22061.5 |
| hypothetical protein | SAMN03003324_00544 | Not Available | Positive | 625877 - 626290 | 15688.2 |
| gaf domain-containing protein | SAMN03003324_00545 | Not Available | Negative | 626300 - 627514 | 44762.8 |
| ftsx-like permease family protein | SAMN03003324_00546 | Not Available | Positive | 627796 - 630168 | 88108.0 |
| lyttr dna-binding domain-containing protein | SAMN03003324_00547 | Not Available | Negative | 630230 - 631126 | 34399.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

