Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN03003324_00466 | Not Available | Negative | 540296 - 540958 | 25024.9 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN03003324_00467 | Not Available | Negative | 541068 - 541655 | 22696.9 |
| predicted dehydrogenase | SAMN03003324_00468 | Not Available | Positive | 541805 - 542929 | 41729.4 |
| nagd protein | SAMN03003324_00469 | Not Available | Positive | 543021 - 543140 | 4365.45 |
| nagd protein | SAMN03003324_00470 | Not Available | Positive | 543137 - 543793 | 23812.7 |
| protein of unknown function | SAMN03003324_00471 | Not Available | Negative | 543794 - 544537 | 28439.2 |
| uncharacterized conserved protein yafd, endonuclease/exonuclease/phosphatase (eep) superfamily | SAMN03003324_00472 | Not Available | Positive | 544790 - 545689 | 34470.3 |
| protein of unknown function | SAMN03003324_00473 | Not Available | Negative | 545759 - 546472 | 25568.6 |
| transcriptional regulator, laci family | SAMN03003324_00474 | Not Available | Positive | 546541 - 547656 | 41830.0 |
| alpha-l-fucosidase 2 | SAMN03003324_00475 | Not Available | Negative | 547661 - 550135 | 91377.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

