Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional non-homologous end joining protein ligd | SAMN03003324_00456 | Not Available | Negative | 525320 - 528001 | 101096.0 |
| protein of unknown function | SAMN03003324_00457 | Not Available | Negative | 528118 - 530544 | 89060.0 |
| peroxiredoxin | SAMN03003324_00458 | Not Available | Negative | 530652 - 531221 | 21306.9 |
| n-acetylated-alpha-linked acidic dipeptidase | SAMN03003324_00459 | Not Available | Negative | 531229 - 533424 | 80616.5 |
| hypothetical protein | SAMN03003324_00460 | Not Available | Positive | 533691 - 534686 | 35605.9 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN03003324_00461 | Not Available | Negative | 534746 - 535513 | 27222.7 |
| dihydroxy-acid dehydratase | SAMN03003324_00462 | Not Available | Negative | 535521 - 537236 | 61692.5 |
| arac-type dna-binding protein | SAMN03003324_00463 | Not Available | Positive | 537340 - 538209 | 33338.8 |
| hypothetical protein | SAMN03003324_00464 | Not Available | Positive | 538257 - 538742 | 18082.5 |
| surface antigen | SAMN03003324_00465 | Not Available | Positive | 538860 - 540245 | 51571.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

