Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN03003324_04050 | Not Available | Positive | 4443861 - 4444445 | 22308.2 |
| fecr family protein | SAMN03003324_04051 | Not Available | Positive | 4444519 - 4445508 | 36963.9 |
| outer membrane receptor proteins, mostly fe transport | SAMN03003324_04052 | Not Available | Positive | 4445640 - 4448438 | 104146.0 |
| hypothetical protein | SAMN03003324_04053 | Not Available | Positive | 4449056 - 4449250 | 7065.49 |
| hypothetical protein | SAMN03003324_04054 | Not Available | Negative | 4449766 - 4450770 | 38566.7 |
| hypothetical protein | SAMN03003324_04055 | Not Available | Negative | 4450775 - 4451089 | 12057.8 |
| bacteriophage abortive infection abih | SAMN03003324_04056 | Not Available | Negative | 4451651 - 4452466 | 31446.3 |
| Trna-phe | Not Available | Not Available | Positive | 4452713 - 4452785 | Not Available |
| 4fe-4s double cluster binding domain-containing protein | SAMN03003324_04058 | Not Available | Positive | 4452997 - 4454292 | 48193.1 |
| cysteine-rich domain-containing protein | SAMN03003324_04059 | Not Available | Positive | 4454317 - 4455117 | 29264.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

