Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase | SAMN03003324_04040 | Not Available | Positive | 4433653 - 4434231 | 21888.4 |
| phosphoribosylaminoimidazolecarboxamide formyltransferase / imp cyclohydrolase | SAMN03003324_04041 | Not Available | Positive | 4434305 - 4435831 | 55924.8 |
| rod shape-determining protein mreb | SAMN03003324_04042 | Not Available | Positive | 4435917 - 4436939 | 36789.0 |
| rod shape-determining protein mrec | SAMN03003324_04043 | Not Available | Positive | 4437007 - 4437846 | 31003.3 |
| rod shape-determining protein mred | SAMN03003324_04044 | Not Available | Positive | 4437836 - 4438351 | 19772.8 |
| penicillin-binding protein 2 | SAMN03003324_04045 | Not Available | Positive | 4438351 - 4440270 | 72015.4 |
| rod shape determining protein roda | SAMN03003324_04046 | Not Available | Positive | 4440270 - 4441535 | 47273.4 |
| hypothetical protein | SAMN03003324_04047 | Not Available | Negative | 4441532 - 4442734 | 45775.3 |
| thymidine kinase | SAMN03003324_04048 | Not Available | Positive | 4442837 - 4443412 | 21096.3 |
| Trna-phe | Not Available | Not Available | Positive | 4443564 - 4443636 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

