Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding regulatory protein, yebc/pmpr family | SAMN03003324_04010 | Not Available | Positive | 4392351 - 4393076 | 27270.1 |
| cubico group peptidase, beta-lactamase class c family | SAMN03003324_04011 | Not Available | Negative | 4393369 - 4394673 | 49126.8 |
| alpha/beta hydrolase family protein | SAMN03003324_04012 | Not Available | Negative | 4395495 - 4396286 | 29622.5 |
| starch-binding associating with outer membrane | SAMN03003324_04013 | Not Available | Negative | 4396369 - 4398084 | 62347.7 |
| tonb-linked outer membrane protein, susc/raga family | SAMN03003324_04014 | Not Available | Negative | 4398207 - 4400396 | 80539.3 |
| tonb-dependent outer membrane receptor, susc/raga subfamily, signature region | SAMN03003324_04015 | Not Available | Negative | 4400393 - 4401424 | 36262.4 |
| beta-glucosidase | SAMN03003324_04016 | Not Available | Negative | 4401789 - 4404083 | 83884.0 |
| hypothetical protein | SAMN03003324_04017 | Not Available | Negative | 4404108 - 4405502 | 53313.0 |
| starch-binding associating with outer membrane | SAMN03003324_04018 | Not Available | Negative | 4405528 - 4407042 | 55788.6 |
| tonb-linked outer membrane protein, susc/raga family | SAMN03003324_04019 | Not Available | Negative | 4407057 - 4410068 | 108418.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

