Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydroxypyruvate isomerase | SAMN03003324_04000 | Not Available | Negative | 4381677 - 4382561 | 32772.3 |
| nucleoside transporter | SAMN03003324_04001 | Not Available | Negative | 4382563 - 4383807 | 45499.4 |
| protein of unknown function | SAMN03003324_04002 | Not Available | Negative | 4383833 - 4384534 | 26201.9 |
| predicted dehydrogenase | SAMN03003324_04003 | Not Available | Negative | 4384547 - 4386004 | 53618.7 |
| cytochrome c | SAMN03003324_04004 | Not Available | Negative | 4386042 - 4386440 | 13903.6 |
| sugar phosphate isomerase/epimerase | SAMN03003324_04005 | Not Available | Negative | 4386554 - 4387615 | 39964.0 |
| predicted dehydrogenase | SAMN03003324_04006 | Not Available | Negative | 4387620 - 4388780 | 42236.5 |
| choline dehydrogenase | SAMN03003324_04007 | Not Available | Negative | 4388780 - 4390480 | 63586.0 |
| gluconate 2-dehydrogenase subunit 3 | SAMN03003324_04008 | Not Available | Negative | 4390500 - 4391108 | 22213.6 |
| nucleoside-diphosphate-sugar epimerase | SAMN03003324_04009 | Not Available | Positive | 4391386 - 4392333 | 35451.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

