Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dihydropteroate synthase | SAMN03003324_03990 | Not Available | Negative | 4371524 - 4372381 | 31107.0 |
| protein of unknown function | SAMN03003324_03991 | Not Available | Positive | 4372438 - 4372980 | 20529.9 |
| uncharacterized membrane protein ypha, doxx/surf4 family | SAMN03003324_03992 | Not Available | Positive | 4373009 - 4374160 | 43243.7 |
| shikimate kinase | SAMN03003324_03993 | Not Available | Positive | 4374172 - 4374678 | 18744.5 |
| acyl-coa hydrolase | SAMN03003324_03994 | Not Available | Negative | 4374675 - 4375073 | 14825.8 |
| trna pseudouridine38-40 synthase | SAMN03003324_03995 | Not Available | Negative | 4375138 - 4375983 | 32840.7 |
| hexosaminidase | SAMN03003324_03996 | Not Available | Negative | 4375952 - 4377916 | 73867.3 |
| d-alanyl-d-alanine carboxypeptidase / d-alanyl-d-alanine-endopeptidase (penicillin-binding protein 4) | SAMN03003324_03997 | Not Available | Negative | 4377971 - 4379383 | 50998.8 |
| aspartate-semialdehyde dehydrogenase | SAMN03003324_03998 | Not Available | Negative | 4379494 - 4380486 | 36252.0 |
| tat (twin-arginine translocation) pathway signal sequence | SAMN03003324_03999 | Not Available | Negative | 4380798 - 4381667 | 31880.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

