Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipopolysaccharide export system atp-binding protein | SAMN03003324_03980 | Not Available | Negative | 4359960 - 4360694 | 27389.1 |
| exonuclease recj | SAMN03003324_03981 | Not Available | Negative | 4360700 - 4362406 | 63579.6 |
| glyoxylase, beta-lactamase superfamily ii | SAMN03003324_03982 | Not Available | Positive | 4362587 - 4363354 | 29121.1 |
| response regulator receiver domain-containing protein | SAMN03003324_03983 | Not Available | Negative | 4363364 - 4363759 | 14999.3 |
| glycine dehydrogenase (decarboxylating) alpha subunit | SAMN03003324_03984 | Not Available | Negative | 4363897 - 4366782 | 105192.0 |
| pyridoxine 5-phosphate synthase | SAMN03003324_03985 | Not Available | Negative | 4366855 - 4367670 | 30191.0 |
| adenosylhomocysteinase | SAMN03003324_03986 | Not Available | Negative | 4367934 - 4369250 | 48148.7 |
| hypothetical protein | SAMN03003324_03987 | Not Available | Positive | 4369422 - 4369988 | 21587.9 |
| putative bacilliredoxin, yphp/yqiw family | SAMN03003324_03988 | Not Available | Positive | 4370175 - 4370585 | 14774.8 |
| tigr00159 family protein | SAMN03003324_03989 | Not Available | Negative | 4370703 - 4371494 | 29794.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

