Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN03003324_03970 | Not Available | Negative | 4346319 - 4346593 | 10599.8 |
| hypothetical protein | SAMN03003324_03971 | Not Available | Positive | 4346714 - 4347574 | 31836.3 |
| nadph-dependent ferric siderophore reductase, contains fad-binding and sip domains | SAMN03003324_03972 | Not Available | Positive | 4347950 - 4348777 | 31173.0 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN03003324_03973 | Not Available | Positive | 4348998 - 4349558 | 22386.9 |
| fecr family protein | SAMN03003324_03974 | Not Available | Positive | 4349582 - 4350736 | 43570.6 |
| tonb-linked outer membrane protein, susc/raga family | SAMN03003324_03975 | Not Available | Positive | 4350813 - 4354337 | 131712.0 |
| starch-binding associating with outer membrane | SAMN03003324_03976 | Not Available | Positive | 4354366 - 4356138 | 67526.7 |
| metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family | SAMN03003324_03977 | Not Available | Positive | 4356180 - 4357109 | 35024.5 |
| gaf domain-containing protein | SAMN03003324_03978 | Not Available | Negative | 4357168 - 4358388 | 45280.3 |
| gh3 auxin-responsive promoter | SAMN03003324_03979 | Not Available | Negative | 4358429 - 4359943 | 58424.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

