Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted metalloprotease, contains c-terminal pdz domain | SAMN03003324_03960 | Not Available | Negative | 4332925 - 4334715 | 66301.9 |
| membrane fusion protein, multidrug efflux system | SAMN03003324_03961 | Not Available | Positive | 4334860 - 4335936 | 38153.1 |
| multidrug efflux pump | SAMN03003324_03962 | Not Available | Positive | 4335947 - 4339060 | 114301.0 |
| outer membrane protein tolc | SAMN03003324_03963 | Not Available | Positive | 4339071 - 4340384 | 48561.2 |
| badf-type atpase | SAMN03003324_03964 | Not Available | Positive | 4340402 - 4341256 | 32235.2 |
| hypothetical protein | SAMN03003324_03965 | Not Available | Negative | 4341263 - 4341754 | 18041.4 |
| hypothetical protein | SAMN03003324_03966 | Not Available | Negative | 4341942 - 4342139 | 7691.25 |
| hypothetical protein | SAMN03003324_03967 | Not Available | Positive | 4342547 - 4345066 | 98249.8 |
| pas domain s-box-containing protein | SAMN03003324_03968 | Not Available | Negative | 4345080 - 4345862 | 29653.4 |
| hypothetical protein | SAMN03003324_03969 | Not Available | Positive | 4346025 - 4346318 | 11468.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

