Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fkbp-type peptidyl-prolyl cis-trans isomerase fkpa | SAMN03003324_03940 | Not Available | Negative | 4305788 - 4306318 | 19724.2 |
| acyl-coa dehydrogenase | SAMN03003324_03941 | Not Available | Negative | 4306457 - 4308247 | 65790.3 |
| acetyl-coa acyltransferase | SAMN03003324_03942 | Not Available | Negative | 4308252 - 4309430 | 41558.2 |
| 3-hydroxyacyl-coa dehydrogenase | SAMN03003324_03943 | Not Available | Negative | 4309508 - 4311913 | 88862.1 |
| dna-binding transcriptional regulator, marr family | SAMN03003324_03944 | Not Available | Negative | 4311894 - 4312352 | 17215.8 |
| ompa-ompf porin, oop family | SAMN03003324_03945 | Not Available | Negative | 4312512 - 4313828 | 46971.6 |
| long-chain acyl-coa synthetase | SAMN03003324_03946 | Not Available | Negative | 4313950 - 4315737 | 67123.0 |
| hypothetical protein | SAMN03003324_03947 | Not Available | Positive | 4316009 - 4316488 | 17312.7 |
| hypothetical protein | SAMN03003324_03948 | Not Available | Positive | 4316499 - 4316657 | 5975.19 |
| hypothetical protein | SAMN03003324_03949 | Not Available | Positive | 4317655 - 4318050 | 15393.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

