Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidase family m1 | SAMN03003324_03930 | Not Available | Positive | 4292474 - 4294129 | 63194.8 |
| putative auto-transporter adhesin, head gin domain | SAMN03003324_03931 | Not Available | Positive | 4294202 - 4294933 | 24996.8 |
| hypothetical protein | SAMN03003324_03932 | Not Available | Negative | 4295021 - 4295911 | 33754.9 |
| 2-oxoglutarate dehydrogenase e2 component | SAMN03003324_03933 | Not Available | Negative | 4296123 - 4297349 | 43135.1 |
| 2-oxoglutarate dehydrogenase e1 component | SAMN03003324_03934 | Not Available | Negative | 4297369 - 4300164 | 105062.0 |
| dna-binding transcriptional regulator, merr family | SAMN03003324_03935 | Not Available | Negative | 4300219 - 4301097 | 33365.8 |
| deoxyribodipyrimidine photo-lyase | SAMN03003324_03936 | Not Available | Negative | 4301180 - 4302427 | 47209.7 |
| hypothetical protein | SAMN03003324_03937 | Not Available | Positive | 4302591 - 4303505 | 33462.6 |
| deoxyribodipyrimidine photo-lyase | SAMN03003324_03938 | Not Available | Positive | 4303561 - 4304868 | 51176.7 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | SAMN03003324_03939 | Not Available | Negative | 4304878 - 4305780 | 33099.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

