Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN03003324_03910 | Not Available | Positive | 4272348 - 4272467 | 4635.66 |
| toprim-like | SAMN03003324_03911 | Not Available | Positive | 4272982 - 4273953 | 36733.4 |
| transposase | SAMN03003324_03912 | Not Available | Positive | 4273963 - 4274272 | 11954.1 |
| Trna-asn | Not Available | Not Available | Positive | 4274400 - 4274476 | Not Available |
| Trna-asn | Not Available | Not Available | Positive | 4274605 - 4274678 | Not Available |
| sugar or nucleoside kinase, ribokinase family | SAMN03003324_03915 | Not Available | Positive | 4274824 - 4275741 | 33547.4 |
| predicted heme/steroid binding protein | SAMN03003324_03916 | Not Available | Negative | 4275787 - 4276023 | 9142.92 |
| lycopene cyclase domain-containing protein | SAMN03003324_03917 | Not Available | Negative | 4276028 - 4276705 | 26198.0 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN03003324_03918 | Not Available | Negative | 4276842 - 4277372 | 20390.6 |
| udp-n-acetylmuramate dehydrogenase | SAMN03003324_03919 | Not Available | Negative | 4277540 - 4278556 | 36816.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

