Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN03003324_03900 | Not Available | Positive | 4264449 - 4264808 | 13381.2 |
| hypothetical protein | SAMN03003324_03901 | Not Available | Positive | 4264863 - 4265102 | 9240.25 |
| dna-binding transcriptional regulator, xre-family hth domain | SAMN03003324_03902 | Not Available | Negative | 4265099 - 4265530 | 16563.6 |
| acetyltransferase (gnat) family protein | SAMN03003324_03903 | Not Available | Positive | 4265871 - 4266437 | 21942.8 |
| regulatory protein, luxr family | SAMN03003324_03904 | Not Available | Positive | 4266444 - 4267391 | 36536.9 |
| protein involved in initiation of plasmid replication | SAMN03003324_03905 | Not Available | Negative | 4267399 - 4268343 | 36843.6 |
| dna polymerase v | SAMN03003324_03906 | Not Available | Negative | 4269345 - 4270610 | 46789.8 |
| dna polymerase v | SAMN03003324_03907 | Not Available | Negative | 4270607 - 4271038 | 16004.3 |
| hypothetical protein | SAMN03003324_03908 | Not Available | Positive | 4271092 - 4271364 | 10273.1 |
| putative sos response-associated peptidase yedk | SAMN03003324_03909 | Not Available | Positive | 4271370 - 4272149 | 30355.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

