Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| reverse transcriptase (rna-dependent dna polymerase) | SAMN03003324_03850 | Not Available | Positive | 4208807 - 4210561 | 68327.0 |
| restriction endonuclease | SAMN03003324_03851 | Not Available | Negative | 4210575 - 4212044 | 57632.5 |
| hypothetical protein | SAMN03003324_03852 | Not Available | Negative | 4212451 - 4212969 | 19508.5 |
| hypothetical protein | SAMN03003324_03853 | Not Available | Negative | 4212969 - 4213904 | 36441.2 |
| putative phage abortive infection protein | SAMN03003324_03854 | Not Available | Positive | 4214123 - 4215316 | 46906.7 |
| taqi-like c-terminal specificity domain-containing protein | SAMN03003324_03855 | Not Available | Positive | 4215528 - 4218563 | 117592.0 |
| site-specific dna recombinase | SAMN03003324_03856 | Not Available | Negative | 4219047 - 4219601 | 21229.9 |
| toprim-like | SAMN03003324_03857 | Not Available | Negative | 4219603 - 4220550 | 35111.4 |
| thiol-disulfide isomerase or thioredoxin | SAMN03003324_03858 | Not Available | Negative | 4220972 - 4221604 | 23130.1 |
| rnd family efflux transporter, mfp subunit | SAMN03003324_03859 | Not Available | Negative | 4221606 - 4222694 | 40345.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

