Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative sigma-54 modulation protein | SAMN03003324_03809 | Not Available | Negative | 4169986 - 4170333 | 13251.9 |
| integrase/recombinase xerc | SAMN03003324_03810 | Not Available | Negative | 4170348 - 4171232 | 33378.8 |
| integrase core domain-containing protein | SAMN03003324_03811 | Not Available | Negative | 4171866 - 4172132 | 10290.2 |
| bacteroides conjugative transposon tran protein | SAMN03003324_03812 | Not Available | Positive | 4172135 - 4172830 | 26446.7 |
| hypothetical protein | SAMN03003324_03813 | Not Available | Positive | 4172827 - 4173291 | 17415.0 |
| type iv secretion-system coupling protein dna-binding domain-containing protein | SAMN03003324_03814 | Not Available | Positive | 4173331 - 4175295 | 73651.4 |
| peptidase family m23 | SAMN03003324_03815 | Not Available | Positive | 4175305 - 4175955 | 23943.0 |
| hypothetical protein | SAMN03003324_03816 | Not Available | Positive | 4175965 - 4176156 | 6994.05 |
| antirestriction protein ardc | SAMN03003324_03817 | Not Available | Positive | 4176146 - 4177360 | 45771.4 |
| protein of unknown function | SAMN03003324_03818 | Not Available | Positive | 4177372 - 4178250 | 32872.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

