Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase involved in cell wall bisynthesis | SAMN03003324_03789 | Not Available | Positive | 4151348 - 4152493 | 42659.8 |
| l-threonylcarbamoyladenylate synthase | SAMN03003324_03790 | Not Available | Positive | 4152526 - 4153092 | 21012.2 |
| hdig domain-containing protein | SAMN03003324_03791 | Not Available | Positive | 4153159 - 4154580 | 53783.1 |
| pria4b orf-3-like protein | SAMN03003324_03792 | Not Available | Positive | 4154626 - 4155270 | 24839.1 |
| trna dimethylallyltransferase | SAMN03003324_03793 | Not Available | Positive | 4155279 - 4156199 | 34496.3 |
| protein of unknown function | SAMN03003324_03794 | Not Available | Negative | 4156183 - 4156497 | 11594.9 |
| dna-directed rna polymerase subunit beta' | SAMN03003324_03795 | Not Available | Negative | 4156619 - 4160911 | 159874.0 |
| dna-directed rna polymerase subunit beta | SAMN03003324_03796 | Not Available | Negative | 4160996 - 4164799 | 142352.0 |
| lsu ribosomal protein l12p | SAMN03003324_03797 | Not Available | Negative | 4164953 - 4165327 | 12865.5 |
| lsu ribosomal protein l10p | SAMN03003324_03798 | Not Available | Negative | 4165391 - 4165912 | 18760.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

