Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN03003324_03779 | Not Available | Positive | 4137444 - 4139789 | 87947.0 |
| thioredoxin | SAMN03003324_03780 | Not Available | Negative | 4139853 - 4140170 | 11533.0 |
| dna polymerase iii, alpha subunit | SAMN03003324_03781 | Not Available | Negative | 4140242 - 4144675 | 166754.0 |
| apolipoprotein d and lipocalin family protein | SAMN03003324_03782 | Not Available | Negative | 4144827 - 4145396 | 22023.5 |
| malate dehydrogenase (nad) | SAMN03003324_03783 | Not Available | Positive | 4145529 - 4146467 | 32893.1 |
| aspartyl protease | SAMN03003324_03784 | Not Available | Positive | 4146468 - 4146923 | 16807.6 |
| dna gyrase subunit b | SAMN03003324_03785 | Not Available | Negative | 4146993 - 4148987 | 74105.5 |
| periplasmic chaperone for outer membrane proteins skp | SAMN03003324_03786 | Not Available | Positive | 4149135 - 4149740 | 22110.0 |
| heat shock protein hsp15 | SAMN03003324_03787 | Not Available | Negative | 4149838 - 4150239 | 15338.5 |
| 2,3,4,5-tetrahydropyridine-2-carboxylate n-succinyltransferase | SAMN03003324_03788 | Not Available | Positive | 4150317 - 4151135 | 29545.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

