Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN03003324_03759 | Not Available | Negative | 4117302 - 4117748 | 16036.6 |
| nadp-dependent 3-hydroxy acid dehydrogenase ydfg | SAMN03003324_03760 | Not Available | Negative | 4117757 - 4118512 | 27193.8 |
| demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase | SAMN03003324_03761 | Not Available | Negative | 4118634 - 4119368 | 27567.4 |
| gtp-binding protein | SAMN03003324_03762 | Not Available | Positive | 4119421 - 4120050 | 23830.8 |
| 4-hydroxybenzoate polyprenyltransferase | SAMN03003324_03763 | Not Available | Positive | 4120058 - 4120924 | 32475.6 |
| oligoendopeptidase f | SAMN03003324_03764 | Not Available | Positive | 4120928 - 4122643 | 65793.2 |
| amino acid/polyamine/organocation transporter, apc superfamily | SAMN03003324_03765 | Not Available | Positive | 4122699 - 4124660 | 72061.7 |
| hypothetical protein | SAMN03003324_03766 | Not Available | Positive | 4125105 - 4126268 | 44990.1 |
| tonb-dependent outer membrane receptor, susc/raga subfamily, signature region | SAMN03003324_03767 | Not Available | Positive | 4126403 - 4127278 | 32201.1 |
| kup system potassium uptake protein | SAMN03003324_03768 | Not Available | Negative | 4127286 - 4129238 | 73118.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

