Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| threonine/homoserine/homoserine lactone efflux protein | SAMN03003324_03749 | Not Available | Positive | 4106164 - 4106790 | 23375.7 |
| amidophosphoribosyltransferase | SAMN03003324_03750 | Not Available | Negative | 4106894 - 4108795 | 72005.3 |
| glutamate racemase | SAMN03003324_03751 | Not Available | Negative | 4108859 - 4109689 | 30711.0 |
| periplasmic chaperone for outer membrane proteins skp | SAMN03003324_03752 | Not Available | Negative | 4109773 - 4110342 | 20451.5 |
| periplasmic chaperone for outer membrane proteins skp | SAMN03003324_03753 | Not Available | Negative | 4110387 - 4110917 | 20158.2 |
| beta-barrel assembly machine subunit bama | SAMN03003324_03754 | Not Available | Negative | 4111082 - 4113634 | 95334.6 |
| undecaprenyl diphosphate synthase | SAMN03003324_03755 | Not Available | Negative | 4113698 - 4114438 | 27919.1 |
| nad+ kinase | SAMN03003324_03756 | Not Available | Negative | 4114754 - 4115635 | 33026.7 |
| hypothetical protein | SAMN03003324_03757 | Not Available | Negative | 4115701 - 4116357 | 24464.7 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN03003324_03758 | Not Available | Negative | 4116357 - 4117121 | 28958.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

