Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-binding cassette protein, chvd family | SAMN03003324_03729 | Not Available | Positive | 4079939 - 4081618 | 62924.0 |
| outer membrane receptor proteins, mostly fe transport | SAMN03003324_03730 | Not Available | Negative | 4081624 - 4084281 | 99055.2 |
| protein of unknown function | SAMN03003324_03731 | Not Available | Negative | 4084335 - 4084583 | 9277.28 |
| atp-independent rna helicase dbpa | SAMN03003324_03732 | Not Available | Negative | 4084585 - 4085889 | 48603.5 |
| hypothetical protein | SAMN03003324_03733 | Not Available | Negative | 4085967 - 4086185 | 8652.79 |
| glucoamylase (glucan-1,4-alpha-glucosidase), gh15 family | SAMN03003324_03734 | Not Available | Positive | 4086335 - 4088116 | 68898.5 |
| trehalose 6-phosphate synthase | SAMN03003324_03735 | Not Available | Negative | 4088201 - 4090390 | 84213.1 |
| hypothetical protein | SAMN03003324_03736 | Not Available | Positive | 4090604 - 4091077 | 17892.7 |
| putative beta-barrel porin-2, ompl-like. bbp2 | SAMN03003324_03737 | Not Available | Negative | 4091125 - 4092168 | 37292.6 |
| ammonium transporter (tc 1.a.11) | SAMN03003324_03738 | Not Available | Negative | 4092223 - 4093602 | 48718.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

