Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN03003324_03719 | Not Available | Negative | 4067198 - 4067566 | 13877.8 |
| beta-barrel assembly machine subunit bamd | SAMN03003324_03720 | Not Available | Positive | 4067855 - 4068787 | 36247.8 |
| rna polymerase rpb6 | SAMN03003324_03721 | Not Available | Positive | 4068787 - 4069113 | 12472.6 |
| phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase | SAMN03003324_03722 | Not Available | Positive | 4069162 - 4070364 | 43185.4 |
| predicted transcriptional regulator | SAMN03003324_03723 | Not Available | Positive | 4070530 - 4070916 | 14663.6 |
| signal transducer regulating beta-lactamase production, contains metallopeptidase domain | SAMN03003324_03724 | Not Available | Positive | 4070928 - 4072622 | 64242.6 |
| dna replication and repair protein recn | SAMN03003324_03725 | Not Available | Positive | 4072745 - 4074412 | 61799.2 |
| carboxypepd_reg-like domain-containing protein | SAMN03003324_03726 | Not Available | Positive | 4074448 - 4075671 | 45945.6 |
| dna repair photolyase | SAMN03003324_03727 | Not Available | Positive | 4075732 - 4076835 | 41080.1 |
| atp-dependent clp protease atp-binding subunit clpc | SAMN03003324_03728 | Not Available | Negative | 4076943 - 4079465 | 94015.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

