Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-n-acetylglucosamine synthase | SAMN03003324_03709 | Not Available | Positive | 4059466 - 4060434 | 36654.4 |
| hypothetical protein | SAMN03003324_03710 | Not Available | Positive | 4060431 - 4061219 | 29886.9 |
| gh3 auxin-responsive promoter | SAMN03003324_03711 | Not Available | Positive | 4061226 - 4062731 | 56532.7 |
| 1-deoxy-d-xylulose 5-phosphate reductoisomerase | SAMN03003324_03712 | Not Available | Positive | 4062728 - 4063894 | 42819.9 |
| site-2 protease. metallo peptidase. merops family m50b | SAMN03003324_03713 | Not Available | Positive | 4063924 - 4065255 | 48407.2 |
| molecular chaperone hscb | SAMN03003324_03714 | Not Available | Positive | 4065260 - 4065793 | 20622.5 |
| integral membrane protein | SAMN03003324_03715 | Not Available | Positive | 4065873 - 4066178 | 11409.5 |
| Trna-leu | Not Available | Not Available | Positive | 4066254 - 4066336 | Not Available |
| transposase | SAMN03003324_03717 | Not Available | Negative | 4066438 - 4066744 | 11840.9 |
| hypothetical protein | SAMN03003324_03718 | Not Available | Negative | 4066745 - 4067201 | 17845.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

