Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| galactose oxidase, central domain | SAMN03003324_00306 | Not Available | Negative | 327563 - 328540 | 36083.9 |
| protein of unknown function | SAMN03003324_00307 | Not Available | Negative | 328547 - 329899 | 50227.1 |
| his kinase a (phospho-acceptor) domain-containing protein | SAMN03003324_00308 | Not Available | Positive | 330013 - 331266 | 47300.6 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN03003324_00309 | Not Available | Positive | 331269 - 331946 | 26141.8 |
| nitric oxide dioxygenase | SAMN03003324_00310 | Not Available | Positive | 332142 - 333350 | 45421.3 |
| transcriptional regulator, badm/rrf2 family | SAMN03003324_00311 | Not Available | Negative | 333401 - 333838 | 16056.4 |
| trna (cmo5u34)-methyltransferase | SAMN03003324_00312 | Not Available | Negative | 334212 - 334919 | 26467.6 |
| 4-alpha-glucanotransferase/malto- oligosyltrehalose synthase,tigr02401 | SAMN03003324_00313 | Not Available | Negative | 334980 - 338948 | 151839.0 |
| maltooligosyltrehalose trehalohydrolase | SAMN03003324_00314 | Not Available | Negative | 338941 - 340731 | 67223.5 |
| hypothetical protein | SAMN03003324_00315 | Not Available | Negative | 340869 - 341030 | 6094.38 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

