Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cell division transport system atp-binding protein | SAMN03003324_03689 | Not Available | Positive | 4041797 - 4042480 | 25391.0 |
| molecular chaperone grpe | SAMN03003324_03690 | Not Available | Positive | 4042608 - 4043195 | 21917.8 |
| molecular chaperone dnaj | SAMN03003324_03691 | Not Available | Positive | 4043198 - 4044367 | 41650.3 |
| nucleotide-binding universal stress protein, uspa family | SAMN03003324_03692 | Not Available | Negative | 4044439 - 4044888 | 16180.3 |
| sh3 domain-containing protein | SAMN03003324_03693 | Not Available | Positive | 4045017 - 4045799 | 29486.6 |
| wd domain-containing protein, g-beta repeat-containing protein | SAMN03003324_03694 | Not Available | Negative | 4045796 - 4046695 | 34053.6 |
| phosphoribosyl-atp pyrophosphatase /phosphoribosyl-amp cyclohydrolase | SAMN03003324_03695 | Not Available | Negative | 4046698 - 4047288 | 22192.5 |
| cyclase | SAMN03003324_03696 | Not Available | Negative | 4047279 - 4048040 | 27404.3 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | SAMN03003324_03697 | Not Available | Negative | 4048044 - 4048793 | 28012.0 |
| glutamine amidotransferase | SAMN03003324_03698 | Not Available | Negative | 4048795 - 4049388 | 21738.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

