Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| homogentisate 1,2-dioxygenase | SAMN03003324_03649 | Not Available | Negative | 4004475 - 4005641 | 44837.2 |
| fumarylacetoacetate (faa) hydrolase | SAMN03003324_03650 | Not Available | Positive | 4006030 - 4007025 | 36946.3 |
| nadh-fmn oxidoreductase rutf, flavin reductase (dim6/ntab) family | SAMN03003324_03651 | Not Available | Positive | 4007025 - 4007921 | 32931.8 |
| nlpc/p60 family protein | SAMN03003324_03652 | Not Available | Negative | 4007926 - 4008438 | 18463.4 |
| short-chain dehydrogenase | SAMN03003324_03653 | Not Available | Negative | 4008529 - 4009230 | 25115.6 |
| phenylalanine-4-hydroxylase | SAMN03003324_03654 | Not Available | Negative | 4009237 - 4011021 | 66740.3 |
| gtra-like protein | SAMN03003324_03655 | Not Available | Negative | 4011107 - 4011586 | 18478.2 |
| cysteine-rich secretory protein family protein | SAMN03003324_03656 | Not Available | Negative | 4011657 - 4012373 | 27412.7 |
| glycyl-trna synthetase | SAMN03003324_03657 | Not Available | Negative | 4012713 - 4014200 | 57482.6 |
| outer membrane protein beta-barrel domain-containing protein | SAMN03003324_03658 | Not Available | Positive | 4014436 - 4014993 | 19487.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

