Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN03003324_03607 | Not Available | Positive | 3955125 - 3955484 | 13100.9 |
| pdz domain (also known as dhr or glgf) | SAMN03003324_03609 | Not Available | Negative | 3956858 - 3958105 | 46553.7 |
| glyceraldehyde 3-phosphate dehydrogenase | SAMN03003324_03611 | Not Available | Positive | 3958555 - 3959577 | 36954.5 |
| phosphoglycerate kinase | SAMN03003324_03612 | Not Available | Positive | 3959788 - 3960981 | 43082.8 |
| mraz protein | SAMN03003324_03613 | Not Available | Positive | 3960997 - 3961629 | 24087.0 |
| 16s rrna (cytosine1402-n4)-methyltransferase | SAMN03003324_03614 | Not Available | Positive | 3961619 - 3962524 | 33840.5 |
| hypothetical protein | SAMN03003324_03615 | Not Available | Positive | 3962521 - 3962943 | 16149.8 |
| cell division protein ftsi (penicillin-binding protein 3) | SAMN03003324_03616 | Not Available | Positive | 3962933 - 3965032 | 76972.8 |
| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase | SAMN03003324_03617 | Not Available | Positive | 3965033 - 3966490 | 53217.7 |
| phospho-n-acetylmuramoyl-pentapeptide- transferase | SAMN03003324_03618 | Not Available | Positive | 3966490 - 3967737 | 46448.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

