Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| two component transcriptional regulator, lyttr family | SAMN03003324_03577 | Not Available | Negative | 3926489 - 3927253 | 29073.0 |
| histidine kinase | SAMN03003324_03578 | Not Available | Negative | 3927225 - 3928295 | 40458.4 |
| hypothetical protein | SAMN03003324_03579 | Not Available | Negative | 3928366 - 3929346 | 36634.1 |
| hypothetical protein | SAMN03003324_03580 | Not Available | Negative | 3929670 - 3930365 | 26597.0 |
| 2-amino-3-ketobutyrate coenzyme a ligase | SAMN03003324_03581 | Not Available | Positive | 3930607 - 3931794 | 43542.5 |
| phenylalanyl-trna synthetase, alpha subunit | SAMN03003324_03582 | Not Available | Positive | 3931927 - 3932964 | 39130.8 |
| transcriptional regulator, tetr family | SAMN03003324_03583 | Not Available | Positive | 3933063 - 3933638 | 22138.8 |
| 23s rrna (uracil1939-c5)-methyltransferase | SAMN03003324_03584 | Not Available | Positive | 3933987 - 3935402 | 53266.8 |
| hypothetical protein | SAMN03003324_03585 | Not Available | Positive | 3935421 - 3935819 | 15172.2 |
| putative auto-transporter adhesin, head gin domain | SAMN03003324_03586 | Not Available | Negative | 3935904 - 3936620 | 24849.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

