Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| branched-chain amino acid aminotransferase | SAMN03003324_03567 | Not Available | Negative | 3918213 - 3919103 | 33187.8 |
| atp synthase f1 subcomplex epsilon subunit | SAMN03003324_03568 | Not Available | Negative | 3919873 - 3920115 | 8560.57 |
| atp synthase f1 subcomplex beta subunit | SAMN03003324_03569 | Not Available | Negative | 3920138 - 3921643 | 54353.3 |
| dtdp-4-dehydrorhamnose reductase | SAMN03003324_03570 | Not Available | Positive | 3921794 - 3922705 | 33647.3 |
| peroxiredoxin | SAMN03003324_03571 | Not Available | Positive | 3922718 - 3923182 | 17116.5 |
| Trna-arg | Not Available | Not Available | Positive | 3923282 - 3923358 | Not Available |
| adenylate kinase | SAMN03003324_03573 | Not Available | Positive | 3923420 - 3923989 | 21005.1 |
| gtp-binding protein | SAMN03003324_03574 | Not Available | Positive | 3924065 - 3925081 | 36092.3 |
| hypothetical protein | SAMN03003324_03575 | Not Available | Positive | 3925421 - 3925558 | 5094.36 |
| hypothetical protein | SAMN03003324_03576 | Not Available | Negative | 3926121 - 3926357 | 8842.55 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

